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Preparing for production testing using Bacterial Culture

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This commit is contained in:
lwark
2025-08-06 13:26:37 -05:00
parent 6f134d3870
commit 087bf9bcb7
24 changed files with 757 additions and 650 deletions
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15
src/submissions/backend/managers/runs.py
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@@ -18,13 +18,14 @@ class DefaultRunManager(DefaultManager):
from backend.managers import DefaultClientSubmissionManager, DefaultProcedureManager
logger.debug(f"Initializing write")
clientsubmission = DefaultClientSubmissionManager(parent=self.parent, input_object=self.pyd.clientsubmission, submissiontype=self.pyd.clientsubmission.submissiontype)
workbook = clientsubmission.write()
workbook = Workbook()
workbook = clientsubmission.write(workbook=workbook)
for procedure in self.pyd.procedure:
# logger.debug(f"Running procedure: {pformat(procedure.__dict__)}")
# # logger.debug(f"Running procedure: {pformat(procedure.__dict__)}")
procedure = DefaultProcedureManager(proceduretype=procedure.proceduretype, parent=self.parent, input_object=procedure)
wb: Workbook = procedure.write()
for sheetname in wb.sheetnames:
source_sheet = wb[sheetname]
ws = workbook.create_sheet(sheetname)
copy_xl_sheet(source_sheet, ws)
workbook: Workbook = procedure.write(workbook=workbook)
# for sheetname in wb.sheetnames:
# source_sheet = wb[sheetname]
# ws = workbook.create_sheet(sheetname)
# copy_xl_sheet(source_sheet, ws)
return workbook