Pre large refactor of templates.
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@@ -554,7 +554,7 @@ class BaseClass(Base):
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output_date = datetime.combine(output_date, addition_time).strftime("%Y-%m-%d %H:%M:%S")
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output_date = datetime.combine(output_date, addition_time).strftime("%Y-%m-%d %H:%M:%S")
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return output_date
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return output_date
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def details_dict(self, expand_children: list = []):
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def details_dict(self):
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relevant = {k: v for k, v in self.__class__.__dict__.items() if
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relevant = {k: v for k, v in self.__class__.__dict__.items() if
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isinstance(v, InstrumentedAttribute) or isinstance(v, AssociationProxy)}
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isinstance(v, InstrumentedAttribute) or isinstance(v, AssociationProxy)}
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output = {}
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output = {}
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@@ -1418,7 +1418,7 @@ class Procedure(BaseClass):
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def delete(self, obj):
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def delete(self, obj):
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logger.debug("Delete!")
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logger.debug("Delete!")
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def details_dict(self):
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def details_dict(self, **kwargs):
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output = super().details_dict()
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output = super().details_dict()
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output['kittype'] = output['kittype'].details_dict()
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output['kittype'] = output['kittype'].details_dict()
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output['proceduretype'] = output['proceduretype'].details_dict()
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output['proceduretype'] = output['proceduretype'].details_dict()
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@@ -1882,7 +1882,7 @@ class ProcedureReagentAssociation(BaseClass):
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from backend.validators import PydReagent
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from backend.validators import PydReagent
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return PydReagent(**self.to_sub_dict(kittype=kittype))
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return PydReagent(**self.to_sub_dict(kittype=kittype))
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def details_dict(self):
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def details_dict(self, **kwargs):
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output = super().details_dict()
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output = super().details_dict()
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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relevant = {k: v for k, v in output.items() if k not in ['reagent']}
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relevant = {k: v for k, v in output.items() if k not in ['reagent']}
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@@ -2337,7 +2337,7 @@ class ProcedureEquipmentAssociation(BaseClass):
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query = query.filter(cls.equipmentrole == equipmentrole)
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query = query.filter(cls.equipmentrole == equipmentrole)
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return cls.execute_query(query=query, limit=limit, **kwargs)
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return cls.execute_query(query=query, limit=limit, **kwargs)
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def details_dict(self):
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def details_dict(self, **kwargs):
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output = super().details_dict()
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output = super().details_dict()
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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relevant = {k: v for k, v in output.items() if k not in ['equipment']}
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relevant = {k: v for k, v in output.items() if k not in ['equipment']}
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@@ -2814,6 +2814,16 @@ class ProcedureTipsAssociation(BaseClass):
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from backend.validators import PydTips
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from backend.validators import PydTips
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return PydTips(name=self.tips.name, lot=self.tips.lot, role=self.role_name)
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return PydTips(name=self.tips.name, lot=self.tips.lot, role=self.role_name)
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def details_dict(self, **kwargs):
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output = super().details_dict()
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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relevant = {k: v for k, v in output.items() if k not in ['tips']}
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output = output['tips'].details_dict()
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misc = output['_misc_info']
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output.update(relevant)
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output['_misc_info'] = misc
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return output
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class Results(BaseClass):
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class Results(BaseClass):
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@@ -333,6 +333,7 @@ class ClientSubmission(BaseClass, LogMixin):
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output['submissiontype'] = output['submissiontype'].details_dict()
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output['submissiontype'] = output['submissiontype'].details_dict()
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output['run'] = [run.details_dict() for run in output['run']]
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output['run'] = [run.details_dict() for run in output['run']]
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output['sample'] = [sample.details_dict() for sample in output['clientsubmissionsampleassociation']]
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output['sample'] = [sample.details_dict() for sample in output['clientsubmissionsampleassociation']]
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output['name'] = self.name
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return output
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return output
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@@ -590,7 +591,7 @@ class Run(BaseClass, LogMixin):
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output["completed_date"] = self.completed_date
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output["completed_date"] = self.completed_date
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return output
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return output
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def details_dict(self):
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def details_dict(self, **kwargs):
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output = super().details_dict()
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output = super().details_dict()
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output['sample'] = [sample.details_dict() for sample in output['runsampleassociation']]
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output['sample'] = [sample.details_dict() for sample in output['runsampleassociation']]
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output['procedure'] = [procedure.details_dict() for procedure in output['procedure']]
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output['procedure'] = [procedure.details_dict() for procedure in output['procedure']]
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@@ -1636,7 +1637,7 @@ class ClientSubmissionSampleAssociation(BaseClass):
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sample['submission_rank'] = self.submission_rank
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sample['submission_rank'] = self.submission_rank
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return sample
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return sample
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def details_dict(self):
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def details_dict(self, **kwargs):
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output = super().details_dict()
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output = super().details_dict()
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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relevant = {k: v for k, v in output.items() if k not in ['sample']}
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relevant = {k: v for k, v in output.items() if k not in ['sample']}
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@@ -2055,7 +2056,7 @@ class RunSampleAssociation(BaseClass):
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def delete(self):
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def delete(self):
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raise AttributeError(f"Delete not implemented for {self.__class__}")
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raise AttributeError(f"Delete not implemented for {self.__class__}")
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def details_dict(self):
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def details_dict(self, **kwargs):
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output = super().details_dict()
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output = super().details_dict()
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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relevant = {k: v for k, v in output.items() if k not in ['sample']}
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relevant = {k: v for k, v in output.items() if k not in ['sample']}
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@@ -2126,7 +2127,7 @@ class ProcedureSampleAssociation(BaseClass):
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logger.error(f"Problem incrementing id: {e}")
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logger.error(f"Problem incrementing id: {e}")
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return 1
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return 1
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def details_dict(self):
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def details_dict(self, **kwargs):
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output = super().details_dict()
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output = super().details_dict()
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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# NOTE: Figure out how to merge the misc_info if doing .update instead.
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relevant = {k: v for k, v in output.items() if k not in ['sample']}
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relevant = {k: v for k, v in output.items() if k not in ['sample']}
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@@ -7,13 +7,11 @@
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<style>
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<style>
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{% for c in css %}
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{% for c in css %}
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{{ c }}
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{{ c }}
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{% endfor %}
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{% endfor %}
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</style>
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</style>
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{% endif %}
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{% endif %}
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<script src="qrc:///qtwebchannel/qwebchannel.js"></script>
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<script src="qrc:///qtwebchannel/qwebchannel.js"></script>
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{% endblock %}
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{% endblock %}
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</head>
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</head>
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<body>
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<body>
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{% block body %}
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{% block body %}
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